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NYU-Molecular-Pathology / NGS580-nf

Target exome sequencing analysis for NYU NGS580 gene panel
GNU General Public License v3.0
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add FACETS to pipeline #6

Closed stevekm closed 5 years ago

stevekm commented 5 years ago

need to add FACETS analysis step to pipeline for tumor purity analysis

https://github.com/mskcc/facets

https://github.com/mskcc/facets/blob/master/vignettes/FACETS.pdf

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5027494/

https://anaconda.org/bioconda/r-facets