NaegleLab / CoDIAC

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Speed up Domain Fetch in Uniprot Reference (Interpro) #33

Closed knaegle closed 4 months ago

knaegle commented 1 year ago

Feature Former code attempted to identify the correct node of Interpro domains in a uniprot sequence by using hierarchy etc. Later code ultimately used the fact that Interpro returns appear to prioritize the parent domain based on ordering in the list. We have not yet asked whether that is sufficient and we can remove additional layers of complexity at

Tasks

Include specific tasks in the order they need to be done in. Include links to specific lines of code where the task should happen at.

knaegle commented 4 months ago

Completed by Logan