NaegleLab / CoDIAC

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Non-human domain start error #48

Closed adshimpi closed 5 months ago

adshimpi commented 5 months ago

General Information

When fetching InterPro Domain information for non-human species there are certain UniProt IDs that will have domain information containing position information with non-integer characters. An example is with mouse KIF16B (UniProt ID: B1AVY7) where likely the FHA domain has a starting position of ~480 (see screenshot).

image

On the InterPro website the graphical representation does not appear to have this issue (see screenshot below).

image

To Reproduce

Example code after importing CoDIAC:

ref_file_name = 'CODIAC Debugging Test.csv' uniprot_debugging = ['B1AVY7'] uniprot_df = CoDIAC.UniProt.makeRefFile(uniprot_debugging, ref_file_name)

Tasks

Include specific tasks in the order they need to be done in. Include links to specific lines of code where the task should happen at, if known