NaegleLab / KSTAR

Kinase-Substrate Translation to Activity Relationships
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Visualization of evidence used in calculation #48

Closed knaegle closed 1 year ago

knaegle commented 1 year ago

Feature request - improve coupling of data used with analysis results It would be very helpful to add a visualization of the number of sites used in an experimental column in the process of KSTAR. This would be most helpful when coupled with dotplots of scores (for example, one could know if low activity results from low sensitivity due to to few sites.

Describe the solution you'd like A graph indication (likely on the bottom of the dotplot, but could be at the top too) of the total number of sites used for an individual experiment, relative to the maximum number of sites used in any experiment in a dataset. Could be a circle, or a different shape to avoid confusion with metadata and scores. Perhaps a flag that defaults to plotting on bottom between tick labels and scores or at the top, below any metadata (default bottom makes the most sense to me).

Describe alternatives you've considered Currently, we rely on using the investigation tools to report these numbers, but a direct ability to look at this with scores is preferred.

Additional context Add any other context or screenshots about the feature request here.

srcrowl commented 1 year ago

A new function in DotPlot class called evidence_size() has been added for this purpose