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NanoSim / Porto

The Porto multi-scale framework
GNU General Public License v3.0
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Collect feedback from OpenSUSE Leap 42.2 users on compilation #5

Closed sradl1981 closed 6 years ago

sradl1981 commented 7 years ago

There are minor differences when compiling with OpenSUSE, as well as some missing things in the installation manual that need update.

also, some modules cannot be compiled (e.g., GSL)

sradl1981 commented 7 years ago

Description of how to correctly define SOFTBASE and LD_LIBRARY_PATH in .bashrc is missing in the soft5 manual.

Should be: export SOFTBASE=/usr/local/soft5 export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$SOFTBASE/lib64:$SOFTBASE/lib64/soft5/storage:$SOFTBASE/lib64/soft5/plugins:$HOME/NanoSim/build-soft5/usr/lib64/ export PATH=$PATH:$SOFTBASE/bin

sradl1981 commented 7 years ago

Documentation is misleading: remarc-wrapper has been replaced by ~/NanoSim/run-soft5/examples/remarc/rmc-vasp.sh Why not updating the documentation to safe a lot of time of (potential) users?

sradl1981 commented 7 years ago

Configuration options (using ccmake) look like the following (used by OpenSUSE user, works almost fine)

BUILD_GTEST ON BUILD_HD5 OFF BUILD_MONGOC ON BUILD_TESTING OFF CMAKE_BUILD_TYPE Debug CMAKE_INSTALL_PREFIX /usr/local/soft5 HDF5_DIR /home/sradl/NanoSim/build-soft5/usr/share/cmake Qt5Concurrent_DIR /usr/lib64/cmake/Qt5Concurrent Qt5Core_DIR /usr/lib64/cmake/Qt5Core Qt5Network_DIR /usr/lib64/cmake/Qt5Network Qt5Script_DIR /usr/lib64/cmake/Qt5Script USE_PYTHON3 OFF VALGRIND /home/sradl/bin/valgrind WITH_FOREIGN_C OFF WITH_FOREIGN_FORTRAN OFF WITH_FOREIGN_PYTHON OFF WITH_HSM OFF WITH_NUMERICS ON WITH_PLUGIN_GSL ON WITH_PLUGIN_HD5 OFF WITH_PLUGIN_MONGO ON WITH_PLUGIN_NLOPT ON WITH_PLUGIN_SOFT_KERNEL ON WITH_PORTO ON WITH_STORAGE_EXTERNAL ON WITH_STORAGE_HD5 OFF WITH_STORAGE_JSON ON WITH_STORAGE_MONGO ON WITH_TESTS ON WITH_WEB ON

sradl1981 commented 7 years ago

sradl to update this files here https://github.com/NanoSim/Porto/tree/porto/Preview-Final-Release/doc/manual

in the above we should only switch WITH_PORT ON and BUILD_MONGOC ON. we do not need other options

tankefugl commented 7 years ago

This can also be resolved by making BUILD_MONGOC implied by WITH_PORTO

sradl1981 commented 7 years ago

a reference to the most essential features of mongoDB should be made in the manual: https://docs.mongodb.com/manual/introduction/

sradl1981 commented 6 years ago

all tests now run on an OpenSUSE Leap 42.2 machine. docu is fine with some minor updates in this fork: https://github.com/sradl1981/SOFT5