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Brain immune profile for SpatialDecon #15

Open KyoheiM1989 opened 1 year ago

KyoheiM1989 commented 1 year ago

Hi,

I want to do a SpatialDecon on glia and immune cells in the adult human brain, is there a good matrix for any of these?

Kyohei.

maddygriz commented 1 year ago

Hi Kyohei,

We currently have two human brain matrices (Brain_AllenBrainAtlas.RData & Brain_Darmanis.RData) with cell types and publications so you can make an informed decision on which profile to use. If none of those are what you are looking for, you can create your own profile matrix from any single cell paper using the create_profile_matrix() function in spatialDecon.

Hope this helps, Maddy