This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
When working with many CosMx datasets in Seurat, there is often an error thrown that the total size of globals needed for the future expression exceeds the maximum allowed size. Seurat uses parallelization for a number of functions by default for many functions and recommends in their vignette to increase this future.globals.maxSize option to avoid the errors.
This PR adds the recommendation to increase the max size for this option.
When working with many CosMx datasets in Seurat, there is often an error thrown that the total size of globals needed for the future expression exceeds the maximum allowed size. Seurat uses parallelization for a number of functions by default for many functions and recommends in their vignette to increase this
future.globals.maxSizeoption to avoid the errors.This PR adds the recommendation to increase the max size for this option.