Blog post with napari ROI selection

Nanostring-Biostats / CosMx-Analysis-Scratch-Space

This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.

https://nanostring-biostats.github.io/CosMx-Analysis-Scratch-Space/

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Blog post with napari ROI selection #37

Open eveilyeverafter opened 5 months ago

eveilyeverafter commented 5 months ago

Write a post with napari and how to create and use ROIs.

eveilyeverafter commented 3 days ago

Be sure to add examples showing how to subset cells in python (annData) or R (Seurat). RE: #119.

eveilyeverafter commented 3 days ago

Stretch: expand to include R code.