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Nanostring-Biostats / CosMx-Analysis-Scratch-Space

This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
https://nanostring-biostats.github.io/CosMx-Analysis-Scratch-Space/
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Blog post on programmatically stitching napari files #42

Closed eveilyeverafter closed 5 months ago

eveilyeverafter commented 5 months ago

This blog post relates to #40.

I ran the code on my computer (mac) and on a windows computer (via remote desktop). It would be great if the reviewer can check that the windows code works (in particular the virtual environment creation).

eveilyeverafter commented 5 months ago

Abandoning for a different approach.