Nanostring-Biostats / CosMx-Analysis-Scratch-Space

This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
https://nanostring-biostats.github.io/CosMx-Analysis-Scratch-Space/
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update renv to add in reticulate #58

Closed lidanwu closed 5 months ago

lidanwu commented 5 months ago

The current site is not rendering properly due to lack of reticulate package to render the python code. This PR adds reticulate and its dependencies to the renv.lock file. Not sure how to test if it's working locally, so I would merge it to check it this fix the deploy issue online. If it doesn't, I would then change the code block type for all python code.