This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
As stated in issue #63, this PR introduces a python script that does automatic binary mask generation in batch for single-cell application with respect to query marker stain in neighborhood. This could be useful in neuropathology studies.
As stated in issue #63, this PR introduces a python script that does automatic binary mask generation in batch for single-cell application with respect to query marker stain in neighborhood. This could be useful in neuropathology studies.