This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
Currently the make-composite script is single threaded. This works well for small datasets but improved efficiency is needed larger FOVs.
Modify the make-composite.py script to take advantage multiple processors.