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Nanostring-Biostats / CosMx-Analysis-Scratch-Space

This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
https://nanostring-biostats.github.io/CosMx-Analysis-Scratch-Space/
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Stitching panel unavailable in Napari-0.4.19 #70

Closed NetGebremedhin closed 4 months ago

NetGebremedhin commented 5 months ago

The stitching panel is unavailable in the latest Napari versions, 0.4.19 and 0.4.19.post1

eveilyeverafter commented 5 months ago

Please use napari 0.4.17.

NetGebremedhin commented 5 months ago

Thank you. 0.4.17 does not show it either. I do not see a wheel file in 0.4.17. The stitching functionality is part of the CosMx plugin, right?

eveilyeverafter commented 4 months ago

The whl file can be found in the assets folder of the repo. For more info, check out the blog post: https://nanostring-biostats.github.io/CosMx-Analysis-Scratch-Space/posts/using-napari-for-cosmx-data/#part-2-installing-napari-cosmx

NetGebremedhin commented 4 months ago

Thank you. Got it. I see it the 'Stitch Images' panel in 0.4.17.