This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
Squidpy essentials post and flat files export post. The first relates to #69 and shows users how to export AtoMx SIP data, pivot it, read and analyze it with squidpy. The latter, which originally was in the appendix of the former, is a separate-but-related post relating to issues #75.
Squidpy essentials post and flat files export post. The first relates to #69 and shows users how to export AtoMx SIP data, pivot it, read and analyze it with squidpy. The latter, which originally was in the appendix of the former, is a separate-but-related post relating to issues #75.