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Nanostring-Biostats / CosMx-Analysis-Scratch-Space

This repository is an exploratory resource to accelerate opensource analysis of CosMx™ Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
https://nanostring-biostats.github.io/CosMx-Analysis-Scratch-Space/
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build error with h5ad render #78

Closed eveilyeverafter closed 3 months ago

eveilyeverafter commented 3 months ago

There's a build error with the h5ad post trying to use the reticulate package. This is causing the site to not render.

image

I'm not sure what the error is but it might be the header/label that's used.

lidanwu commented 3 months ago

@eveilyeverafter , the build error is because your commit has deleted the reticulate package and its dependency from the renv.lock file. You need to add it back to resolve this.

eveilyeverafter commented 3 months ago

You're correct! I reverted that commit c7bc7e63074d3d62cc4189472b917a06d4c9f62d and it is working. Thank you.