spatial algorithms zoo - additions

Nanostring-Biostats / CosMx-Analysis-Scratch-Space

This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.

https://nanostring-biostats.github.io/CosMx-Analysis-Scratch-Space/

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spatial algorithms zoo - additions #99

Open patrickjdanaher opened 2 months ago

patrickjdanaher commented 2 months ago

[ ] fix links in TOC
[ ] add code for how to get neighborhood expression (calling insitucor is simplest)
[ ] add discussion of random subsampling of neighboring cells
[ ] "neighbors <- InSituCor:::nearestNeighborGraph(x = xy[, 1], y = xy[, 2], n=50)" -> should be "N = 50"
[ ] link to CellularNeighborhoods library

eveilyeverafter commented 1 week ago

@patrickjdanaher , is there a branch or PR for this or has it been closed?