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Nanostring-Biostats / FastReseg

FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.
https://nanostring-biostats.github.io/FastReseg/
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fix error for non-smi input and update vignette #26

Closed lidanwu closed 1 year ago

lidanwu commented 1 year ago

this PR fixed error to make the script compatible with non-smi format transcript data.frame, fixed error for 1-cell per file, and updated the vignette for flagging all errors of SMI inputs.
No error when testing package and processing xenium dataset. image