change the default values for NBth.R and NBthmDE.R

[zhiiiyang]

Unit tests

devtools::check() results

BiocCheck::BiocCheck() results

[zhiiiyang]

I wouldn't worry about the warnings cuz they existed before only associated with the local environment.

[yangleicq]

Looks good to me.

[zhiiiyang]

@NicoleEO, @yangleicq See vignette building resutls

─ installing the package to build vignettes ✓ creating vignettes (7m 5.8s)

> devtools::check(vignettes = TRUE)
ℹ Updating GeoDiff documentation
ℹ Loading GeoDiff
Warning: The existing 'NAMESPACE' file was not generated by roxygen2, and will not be overwritten.
Warning: The existing 'NAMESPACE' file was not generated by roxygen2, and will not be overwritten.
── Building ────────────────────────────────────────────────────────────────────────────────────────────── GeoDiff ──
Setting env vars:
• CFLAGS    : -Wall -pedantic -fdiagnostics-color=always
• CXXFLAGS  : -Wall -pedantic -fdiagnostics-color=always
• CXX11FLAGS: -Wall -pedantic -fdiagnostics-color=always
─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✓  checking for file ‘/home/rstudio/NAS_data/zyang/Rpackages/GeoDiff/DESCRIPTION’ (1.4s)
─  preparing ‘GeoDiff’: (2.8s)
✓  checking DESCRIPTION meta-information ...
─  cleaning src
─  installing the package to build vignettes
✓  creating vignettes (7m 5.8s)
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  looking to see if a ‘data/datalist’ file should be added
─  building ‘GeoDiff_0.99.7.tar.gz’ (1.2s)