GeoDiff, an R package for count generating models for analyzing Geomx RNA data. Note that this version of the package is still under development, undergoing submission process to Bioconductor 3.14 release and still needs to complete NanoString internal verification process.
fitNBthDE has optional parameter size_scale in the NanoStringGeoMxSet method. This parameter if set by user, is not passed to the matrix method call within this function and will override user setting in S4 definition with default, "sum".
fitNBthDE has optional parameter size_scale in the NanoStringGeoMxSet method. This parameter if set by user, is not passed to the matrix method call within this function and will override user setting in S4 definition with default, "sum".