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Nanostring-Biostats / GeomxTools

Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.
MIT License
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error checking with proteogenomics data #170

Open maddygriz opened 2 years ago

maddygriz commented 2 years ago

better edge case errors for proteogenomic data

  1. sample with only 1 analyte in data !all(names(data) %in% names(probeAssay))
maddygriz commented 2 years ago

Sample with only 1 analyte has been determined to be an outlier, will not be common to not have a single RTSID attributed to RNA.