It seems that mixedModelDE function code uses different "elt" data for single or multicore. Is that correct?

Nanostring-Biostats / GeomxTools

Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.

MIT License

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It seems that mixedModelDE function code uses different "elt" data for single or multicore. Is that correct? #194

Closed Flope closed 9 months ago

Flope commented 9 months ago

Hi, I was taking a look at the mixedModelDE and I noticed that the multicore section makes use of the "elt" parameter: 78 exprs$exprs <- assayDataElement(object, elt = elt)

However, the single-core section doesn't seem to use it. It seems that is taking the slot of the expression data (raw counts) no matter what is indicated in the function call (lines 93 and 106). Is what I am saying correct or I am missing something in that function?

Thanks!

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