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Nanostring-Biostats / InSituType

An R package for performing cell typing in SMI and other single cell data
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Insitutype error during iteration 8 of phase 3 #112

Closed mtgregory closed 2 years ago

mtgregory commented 2 years ago

I ran the MAYO data (~250K cells from ~75 FOVs) with 83 clusters (9 of the 12 IOprofiles had anchors)+ 68 tumor clusters + 6unsupervised clusters). It ran for ~15hours and got to phase 3 iteration 8 before if gave this error: image

You may also notice it had other server warnings/errors as well. However, it has had those before as well and didnt error out. Examples: image

I will restart this analysis to try to determine if it was a server error issue but I wanted to log it in case it is a bug.

mtgregory commented 2 years ago

This error did not reproduce when the dante container was closed and not opened until the insitutype() call finished. This this bug was likely an issue with the AWS/Dante connection, not the code.

Closing this issue.