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Nanostring-Biostats
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An R package for performing cell typing in SMI and other single cell data
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new feature: convenience functions for feeding image and spatial data into cohorts
#166
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patrickjdanaher
opened
2 years ago
patrickjdanaher
commented
2 years ago
Functions:
something to process image data?
Probably not needed - just take area, aspect ratio and IF values as a matrix. Or maybe log-transform first.
a function to 1. define cells' neighbors, 2. get cells' mean neighborhood expression, 3. use PCA to reduce neighborhood expression to 10 dimensions.
Functions:
something to process image data?Probably not needed - just take area, aspect ratio and IF values as a matrix. Or maybe log-transform first.