I am currently looking into different normalization methods for the CosMX and I realized the Insitutype works with the raw counts models the expression within each of the cell. Is it possible to extract the modeled expression levels/normalized expression levels? I know at the moment it outputs mean expression for each of the clusters, but I was wondering if it was possible to get the expression levels for each cell too since it is probably used to calculate the likelihoods
Thank you again for this tool and any help with this would greatly appreciated!
Hello,
First of all, thank you for this great tool!
I am currently looking into different normalization methods for the CosMX and I realized the Insitutype works with the raw counts models the expression within each of the cell. Is it possible to extract the modeled expression levels/normalized expression levels? I know at the moment it outputs mean expression for each of the clusters, but I was wondering if it was possible to get the expression levels for each cell too since it is probably used to calculate the likelihoods
Thank you again for this tool and any help with this would greatly appreciated!