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Nanostring-Biostats / InSituType

An R package for performing cell typing in SMI and other single cell data
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perhaps nbclust shouldn't rescale its profiles #88

Closed patrickjdanaher closed 2 years ago

patrickjdanaher commented 2 years ago

Right now it rescales every profile to have the same sum. But this hides profiles that are all low count save for a single gene.

(But then Estep would need to use rowMeans and mean, not rowSums and sum.

patrickjdanaher commented 2 years ago

Simple implementation: produce unscaled profiles only for the output, not while running iterations.

patrickjdanaher commented 2 years ago

resolved in PR #108