Error in `check_aesthetics() when following Introduction vignette

[cbostwick87]

Hello! I am attempting to follow the Introduction vignette for this package. When I reach the Built-in Quality Control Assessment section and try to plot QC metrics using the command: girafe( ggobj = autoplot( demoData , "bindingDensity-mean" ) ) (or use any of the other metric types) I get the error: Error in check_aesthetics(): ! Aesthetics must be either length 1 or the same as the data (12): tooltip_fill

I would appreciate any help you could provide me to solve this issue. Thank you very much!

My session info: sessionInfo() R version 4.1.0 (2021-05-18) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19043)

Matrix products: default

locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252

attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets methods base

other attached packages: [1] ggiraph_0.8.2 ggthemes_4.2.4 NanoStringNCTools_1.0.0 ggplot2_3.3.6 S4Vectors_0.30.2 Biobase_2.52.0
[7] BiocGenerics_0.38.0

loaded via a namespace (and not attached): [1] beeswarm_0.4.0 tidyselect_1.1.2 purrr_0.3.4 colorspace_2.0-3 vctrs_0.3.8 generics_0.1.3
[7] htmltools_0.5.1.1 yaml_2.2.1 utf8_1.2.2 rlang_1.0.3 pillar_1.7.0 glue_1.6.2
[13] withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3 uuid_1.1-0 GenomeInfoDbData_1.2.6 lifecycle_1.0.1
[19] stringr_1.4.0 zlibbioc_1.38.0 Biostrings_2.60.2 munsell_0.5.0 gtable_0.3.0 htmlwidgets_1.5.4
[25] evaluate_0.15 labeling_0.4.2 IRanges_2.26.0 GenomeInfoDb_1.28.4 vipor_0.4.5 fansi_0.5.0
[31] Rcpp_1.0.8.3 scales_1.2.0 BiocManager_1.30.18 XVector_0.32.0 systemfonts_1.0.4 digest_0.6.27
[37] stringi_1.7.6 dplyr_1.0.7 grid_4.1.0 cli_3.3.0 tools_4.1.0 bitops_1.0-7
[43] magrittr_2.0.1 RCurl_1.98-1.7 tibble_3.1.3 crayon_1.5.1 pkgconfig_2.0.3 ellipsis_0.3.2
[49] pheatmap_1.0.12 ggbeeswarm_0.6.0 assertthat_0.2.1 rstudioapi_0.13 R6_2.5.1 compiler_4.1.0

[NicoleEO]

Hi @cbostwick87,

This is an error that was trigged by a dependency update. It has been resolved in NanoStringNCTools package versions >=1.1.1. Thanks for your session info! If you update from your above listed version of 1.0.0, this should resolve it. Let me know if you run into any issues.

Thanks, Nicole

[cbostwick87]

Hi @NicoleEO. I have updated R to version 4.2.1, installed rtools 4.2, devtools, and installed the NanoStringNCTools_1.3.1 package using: devtools::install_github("Nanostring-Biostats/NanoStringNCTools", ref = "dev") and girafe(ggobj = autoplot(demoData, type = "housekeep-geom")) appears to plot as described. Thank you for your help!

[QuentinA-hub]

Hi,

I was following the vignette as well and ran into the same issue at the girafe(ggobj = autoplot(demoData, type = "housekeep-geom")) and girafe(ggobj = autoplot(demoData, type = "lane-bindingDensity")) steps.

I have the latest version of NanoStringNCTools package (1.7.1).

Thank you in advance for the kind help.

Here is my sessionInfo:

R version 4.2.2 (2022-10-31) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Monterey 12.6

Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats4 stats graphics grDevices utils datasets methods base

other attached packages: [1] pheatmap_1.0.12 ggiraph_0.8.5 ggthemes_4.2.4 NanoStringNCTools_1.7.1 ggplot2_3.4.0 S4Vectors_0.36.1
[7] Biobase_2.58.0 BiocGenerics_0.44.0

loaded via a namespace (and not attached): [1] pkgload_1.3.2 shiny_1.7.4 assertthat_0.2.1 GenomeInfoDbData_1.2.9 vipor_0.4.5 remotes_2.4.2
[7] sessioninfo_1.2.2 pillar_1.8.1 glue_1.6.2 uuid_1.1-0 digest_0.6.31 RColorBrewer_1.1-3
[13] promises_1.2.0.1 XVector_0.38.0 colorspace_2.0-3 htmltools_0.5.4 httpuv_1.6.7 pkgconfig_2.0.3
[19] devtools_2.4.5 zlibbioc_1.44.0 purrr_1.0.0 xtable_1.8-4 scales_1.2.1 processx_3.8.0
[25] later_1.3.0 tibble_3.1.8 generics_0.1.3 farver_2.1.1 IRanges_2.32.0 usethis_2.1.6
[31] ellipsis_0.3.2 cachem_1.0.6 withr_2.5.0 cli_3.6.0 magrittr_2.0.3 crayon_1.5.2
[37] mime_0.12 memoise_2.0.1 ps_1.7.2 fs_1.5.2 fansi_1.0.3 beeswarm_0.4.0
[43] pkgbuild_1.4.0 profvis_0.3.7 tools_4.2.2 prettyunits_1.1.1 lifecycle_1.0.3 stringr_1.5.0
[49] munsell_0.5.0 callr_3.7.3 Biostrings_2.66.0 compiler_4.2.2 GenomeInfoDb_1.34.6 systemfonts_1.0.4
[55] rlang_1.0.6 grid_4.2.2 RCurl_1.98-1.9 rstudioapi_0.14 htmlwidgets_1.6.1 miniUI_0.1.1.1
[61] bitops_1.0-7 labeling_0.4.2 gtable_0.3.1 DBI_1.1.3 curl_4.3.3 R6_2.5.1
[67] dplyr_1.0.10 fastmap_1.1.0 utf8_1.2.2 rprojroot_2.0.3 desc_1.4.2 stringi_1.7.8
[73] ggbeeswarm_0.7.1 Rcpp_1.0.9 vctrs_0.5.1 tidyselect_1.2.0 urlchecker_1.0.1