Create custom profile matrix

Nanostring-Biostats / SpatialDecon

The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This algorithm also works in bulk expression profiling data.)

MIT License

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Create custom profile matrix #17

Closed maddygriz closed 3 years ago

maddygriz commented 3 years ago

barebones function, addresses #9
Stephanie reviewed offline
users must provide a count matrix and annotations that have already been read into R. This is a quick workaround for allowing all types of file types including Seurat objects.
annotations must be a dataframe rather than a named vector.
data can be normalized within function but is very basic, recommend normalizing before using function.

maddygriz commented 3 years ago

merged offline for v1.3 release