readSpatialOverlay-Error in .jcal

Nanostring-Biostats / SpatialOmicsOverlay

Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).

MIT License

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Open MusculusMus opened 2 years ago

MusculusMus commented 2 years ago

I want to run the example in the vignette

muBrain <- readSpatialOverlay(ometiff = tifFile, annots = muBrainLW, slideName = "4", image = FALSE,
saveFile = FALSE, outline = FALSE)

Error in .jcall(.jcall("RBioFormats", "Lloci/formats/meta/MetadataStore;", : loci.formats.FormatException: No IFDs found

maddygriz commented 2 years ago

That looks like an issue with your RJava install. Can you uninstall and reinstall that package?