The format of annotation file inputs and their files names are very particular and has non-legible errors. If a file is put down the wrong file read in, have legible errors or course correct to correct file read in.
45, multiple teams conversations
First your lab worksheet is named incorrectly. It needs to have a _LabWorksheet.txt format.
second your lab worksheet isn't formatted as expected.
These are the column names from the labworksheet last time
Sample_ID, slide name, scan name, panel, roi, segment, aoi, area, tags and these are from this labworksheet
Sample_ID, slide name, scan name, panel, ROILabel, segment, roi, area
The roi column is the most important and it's currently pointing to the aoi column so the package isn't getting the correct data.
How did you get this labworksheet? Is it downloaded directly from the instrument or has there been modification to it?
The format of annotation file inputs and their files names are very particular and has non-legible errors. If a file is put down the wrong file read in, have legible errors or course correct to correct file read in.
45, multiple teams conversations