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Nanostring-Biostats / SpatialOmicsOverlay

Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
MIT License
17 stars 4 forks source link

add sf #53

Closed maddygriz closed 11 months ago

maddygriz commented 11 months ago

A customer sent a note to sDAS saying that there are dependencies that were removed from CRAN this month. sp is an SOO dependency at least 3 packages deep so nothing we can really do. SOO doesn't use the functions stated but I added the sf package as a Suggests just in case. image

mgrout81 commented 11 months ago

After running devtools::install_github(repo = "Nanostring-Biostats/SpatialOmicsOverlay", ref = "spPackage"), I did see the same console message as the above screenshot. However, I do see that sf is part of the suggests for SOO.

inf <- packageDescription('SpatialOmicsOverlay') 
inf$GithubRef
# [1] "spPackage"

inf$Suggests
#[1] "knitr, rmarkdown, testthat (>= 3.0.0), stringi, qpdf,\npheatmap, viridis, cowplot, vdiffr, sf"