[MILESTONE CHECKLIST] 1. Html book locally built

[NatalieZelenka]

To-do:

• [x] Organise GitHub
  • [x] Plan milestones (at least up to the one after this)
  • [x] Change branch name to main

  • [x] Feature branches for chapters

• [x] Intro page (#2, #10)
• [x] Front Matter (#6, #9)
• [x] Chapters
  • [x] Chapter 1: Introduction (#11 ,#12)
  • [x] Chapter 2: Biological background (#3, #13 + #20)
  • [x] Chapter 3: Computational biology background (#15, #21)
  • [x] Chapter 4: Phenotype predictor (#16, #31)
  • [x] Chapter 5: Combined dataset (#17, #28)
  • [x] Chapter 6: Filter (#18, #29)
  • [x] Chapter 7: Conclusions (#19, #29)
• [x] References (, #12)

This milestone does not:

• include improvements to any chapters content.
• interactive content

[NatalieZelenka]

I was going to stop trying to get the part/chapter functionality working, but I realised it was a local installation of jupyter-book issue

[NatalieZelenka]

Note: need to add 'Rmd' functionality to the jupyter book.

[NatalieZelenka]

Okay, so there's a lot of work to do, but the great migration is done 🐄 🐄 🐄