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NathanSkene / EWCE

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
https://nathanskene.github.io/EWCE/index.html
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problems running docker image of ewce #18

Closed mocherry closed 3 years ago

mocherry commented 4 years ago

Dear EWCE-team,

I try to use the Docker version of EWCE. The initial steps work without errors. However, when I try to execute: ggplot(cellExpDist) + geom_boxplot(aes(x=l1,y=e)) + xlab("Cell type") + ylab("Unique Molecule Count") + theme(axis.text.x = element_text(angle = 90, hjust = 1))

I get thrown out and no graphics appear. I guess at some stage a graphics window should appear, but being quite new to R and stuff, I do not know where or how to activate it. Is there a way to run the docker image in RStudio?

Thanks for any help in advance. Best Matthias

NathanSkene commented 4 years ago

Yep, it's based on the RStudio rocker docket image, so if you open your browser to localhost:port where port is whatever number you ised, you'll get an rstudio window

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Dear EWCE-team,

I try to use the Docker version of EWCE. The initial steps work without errors. However, when I try to execute: ggplot(cellExpDist) + geom_boxplot(aes(x=l1,y=e)) + xlab("Cell type") + ylab("Unique Molecule Count") + theme(axis.text.x = element_text(angle = 90, hjust = 1))

I get thrown out and no graphics appear. I guess at some stage a graphics window should appear, but being quite new to R and stuff, I do not know where or how to activate it. Is there a way to run the docker image in RStudio?

Thanks for any help in advance. Best Matthias

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