search

NathanSkene / EWCE

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
https://nathanskene.github.io/EWCE/index.html
53 stars 25 forks source link

Add functions for running lots of lists in parallel + graphing results #24

Closed NathanSkene closed 1 year ago

bschilder commented 1 year ago

This is now covered by MulltiEWCE. Originally, this was designed to only work with the HPO gene lists, but I have since extended it to work with any gene lists provided in a table. https://github.com/neurogenomics/MultiEWCE/blob/master/R/gen_results.R

This can be done by adding custom inputs to the following arguments within gen_results:

gene_data,
list_name_column = "Phenotype",
gene_column = "Gene",