Closed zhanglab2008 closed 3 years ago
Hi,
We're trying to get the package back onto bioconductor but their submission system has required that we break the master branch. I suggest installing an earlier commit from before 1 month ago. Would send a link but am on my phone at the moment! Will reply shortly with the specific command to use.
On Mon, 8 Mar 2021, 01:41 zhanglab2008, notifications@github.com wrote:
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Hi, Thanks for writing this great tools. However, I came across an error across all operation systems (Windows, Mac and Ubuntu 20.4) when I installed the package.
ERROR: this R is version 4.0.4, package 'ewceData' requires R >= 4.1
Error: Failed to install 'ewceData' from GitHub:
(converted from warning) installation of package ‘/tmp/Rtmp9xG1JD/file26f92ae904c2/ewceData_0.99.6.tar.gz’ had non-zero exit status
Could you suggest if this is a bug or if I miss something? Many thanks! Zhang
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That works! Thanks!
Hi there! I have also encountered the same problem as @zhanglab2008. Would you mind posting the specific command? Thank you so much!!
edited: just skip to the next comment.
==
@madnessfish Maybe this earlier version (from ~Jan 26, 2021) works:
devtools::install_github("nathanskene/ewce@0aeef50")
although I couldn't make it work.
I made a hack
devtools::install_github("numpde/EWCE", ref="hack")
by commenting a few lines that requires to
load("all_mgi.rda")
load("all_hgnc.rda")
load("mouse_to_human_homologs.rda")
the files from here.
Hi both, the data has been removed from the git history of EWCE as per a requirement of Bioconductor. EWCE will be reinstated on Bioconductor in the next release (likely April/May this year). To make EWCE usable for those with R < 4.1 in the meantime, we have made a separate repository based on a previous commit of EWCE and added back in the necessary data. See neurogenomics/EWCE for details and feel free to create issues on that repo if anything is wrong.
EWCE is available on bioconductor 3.13
Hi, Thanks for writing this great tools. However, I came across an error across all operation systems (Windows, Mac and Ubuntu 20.4) when I installed the package.
Could you suggest if this is a bug or if I miss something? Many thanks! Zhang