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NathanSkene / EWCE

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
https://nathanskene.github.io/EWCE/index.html
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can not install EWCE #33

Closed BenxiaHu closed 3 years ago

BenxiaHu commented 3 years ago

Hello, I try to install EWCE following this page (https://nathanskene.github.io/EWCE/articles/EWCE.html), but I got the following errors: Error: package or namespace load failed for ‘RNOmni’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/nas/longleaf/home/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-RNOmni/00new/RNOmni/libs/RNOmni.so': /nas/longleaf/apps/gcc/6.3.0/lib64/libstdc++.so.6: version `GLIBCXX_3.4.26' not found (required by /nas/longleaf/home/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-RNOmni/00new/RNOmni/libs/RNOmni.so) Error: loading failed Execution halted ERROR: loading failed

The downloaded source packages are in ‘/tmp/RtmpdPeehs/downloaded_packages’ ✔ checking for file ‘/tmp/RtmpdPeehs/remotes74cba85791/neurogenomics-EWCE-793daf3/DESCRIPTION’ ... ─ preparing ‘EWCE’: ✔ checking DESCRIPTION meta-information ... ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ building ‘EWCE_0.99.2.tar.gz’ Warning: invalid uid value replaced by that for user 'nobody'

Installing package into ‘/nas/longleaf/home/R/x86_64-pc-linux-gnu-library/4.0’ (as ‘lib’ is unspecified) ERROR: dependency ‘RNOmni’ is not available for package ‘EWCE’

Al-Murphy commented 3 years ago

Hey,

What OS and R version are you using? We haven't noted an issue installing this before, could you also send the R code you used to install EWCE?

At a glance it looks like the issue is installing RNOmni rather than EWCE so perhaps try install that package and if your issue is there it may be better to get in contact with the RNOmni maintainers.

Thanks, Alan.

Al-Murphy commented 3 years ago

Closing until further information is received