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NathanSkene / EWCE

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
https://nathanskene.github.io/EWCE/index.html
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Imputed data for EWCE object #36

Closed kvshams closed 3 years ago

kvshams commented 3 years ago

Is it possible to use an imputed matrix (eg: MAGIC) to construct the EWCE object?

Al-Murphy commented 3 years ago

Hi @kvshams,

Magic is not dissimilar to scTransform, which EWCE already makes use of in the vignette. So there is no reason it cannot be used. Note however, whether the data was passed through scTransform or not, did not seem to make a big difference to EWCE's results in our testing.

Thanks, Alan.