Travis checks, and even the R-CMD checks we've been using for MungeSumstats, tend to be a bit buggy and randomly fail sometimes (unrelated to the pushed changes to our packages).
biocthis::use_bioc_github_action() automatically creates a yaml file for a GHA workflow that is both more robust (in part thanks for using Docker containers on the fly) and comprehensive (currently working on MacOS, Windows, and Linux).
As a bonus, this workflow ensures the devel version of Bioc is being used (3.14 currently), meaning we can easily install recently added Bioc submissions (e.g. orthogene)
I've now implemented this on the bschilder_dev branch. The only thing in the yaml I had to modify was the name of one of my GH Secrets variables: GITHUB_TOKEN-->PAT_GITHUB
bschilder
commented
2 years ago
Travis checks, and even the R-CMD checks we've been using for MungeSumstats, tend to be a bit buggy and randomly fail sometimes (unrelated to the pushed changes to our packages).
biocthis::use_bioc_github_action()automatically creates a yaml file for a GHA workflow that is both more robust (in part thanks for using Docker containers on the fly) and comprehensive (currently working on MacOS, Windows, and Linux).As a bonus, this workflow ensures the devel version of Bioc is being used (3.14 currently), meaning we can easily install recently added Bioc submissions (e.g.
orthogene)I've now implemented this on the bschilder_dev branch. The only thing in the yaml I had to modify was the name of one of my GH Secrets variables:
GITHUB_TOKEN-->PAT_GITHUB