EWCE:::is_celltypedataset. Does not state why the cell type data is not valid.

NathanSkene / EWCE

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

https://nathanskene.github.io/EWCE/index.html

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EWCE:::is_celltypedataset. Does not state why the cell type data is not valid. #55

Closed roxyisat-rex closed 1 year ago

roxyisat-rex commented 2 years ago

When ctd is missing cell level data which is "annot" (i.e. the assigned cluster of each cell). EWCE will not run. However, it will not explicitly tell you that it is missing this particular feature.

EWCE:::is_celltypedataset(MAGMA.Celltyping::ctd_Zeisel2018)

[1] FALSE

bschilder commented 1 year ago

This was due to the standardise_ctd function not generating the annot sublist in the correct part of the CTD. I've since fixed this and have regenerate and reuploaded all the CTDs distributed via MAGMA.Celltyping.