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NathanSkene / EWCE

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
https://nathanskene.github.io/EWCE/index.html
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Progress bar #6

Closed alexandruioanvoda closed 3 years ago

alexandruioanvoda commented 5 years ago

Hi, can generate.celltype.data() get a progress bar? There are some huge expression matrices that we're working with and it'd be really useful.

NathanSkene commented 5 years ago

I’d be happy to pull in the code for it if you are up for modifying the function! I’m not sure it would work properly though given that the function uses mclapply.

I wrote a version of the function recently which takes a loom file as input. Might work faster if your expression matrix is huge. I’ve attached it to this email… it was written specifically for a dataset I was working on so can’t guarantee it’s “package ready”.

From: Alexandru Ioan Voda notifications@github.com Reply-To: NathanSkene/EWCE reply@reply.github.com Date: Thursday, 20 June 2019 at 14:30 To: NathanSkene/EWCE EWCE@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [NathanSkene/EWCE] Progress bar (#6)

Hi, can generate.celltype.data() get a progress bar? There are some huge expression matrices that we're working with and it'd be really useful.

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