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National-COVID-Cohort-Collaborative / Phenotype_Data_Acquisition

The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream
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Will the Python exporter have a Postgres adapter in the near future? #191

Open kepishelf opened 3 years ago

kepishelf commented 3 years ago

Our OMOP CDM 5.3 at Regenstrief is currently stored in a Postgres database Can this Python script include a postgres adapter? https://github.com/National-COVID-Cohort-Collaborative/Phenotype_Data_Acquisition/tree/master/Exporters/PythonExporter

Thanks for considering, Jeff Warvel - Regenstrief Inst.

marshallclark commented 3 years ago

Hi Jeff, I don't have a way to test a postgres DB connector. If you want to try to modify the python code to work with postgres, I can work with you to get this integrated into the py exporter. We can discuss via Zoom if that helps. thanks -Marshall

kepishelf commented 3 years ago

Marshall - Thanks for reaching out. I did local modification to the python script and have some code working for Postgres, but it's not complete. A zoom would be great. I am Eastern time and could meetup this coming week on Mon 1-2pm, 4pm or Tues 10-12 if any of those work for you.

marshallclark commented 3 years ago

Jeff, send me an email at marshall_clark at med.unc.edu