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National-COVID-Cohort-Collaborative / guide-to-n3c-v1

Research with the National COVID Cohort Collaborative (N3C: https://ncats.nih.gov/n3c)
https://national-covid-cohort-collaborative.github.io/guide-to-n3c-v1/
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Chapter author formatting / ORCiD links #202

Closed oneilsh closed 4 months ago

oneilsh commented 4 months ago

I think we may have lost some formatting on the author lists for each chapter, we used to have ORCiD links and such right?

chrisroederucdenver commented 4 months ago

The chapters' md files still have the metadata as below. Does this involve the mystery about the assets/title-block.html? When I started work on it, the _quarto.yml file referenced title-block.html, not assets/title-block.html. I didn't see such a file at top level, but did in the assets directory, so I changed the _quarto.yml file. After looking, I can say the _quarto.yml file has always said just title-block.html, and the file has always been in the assets directory. The line in _quarto.yml and the file came in on the same commit, b34343b56bff6874cfb896a5f782ef41c50db404.

I can only wonder if the render scripts in google are different from "quarto render" that I run locally and have some default behavior when they cant find the title-block.html as was true for almost a year.

We could just put the _quaro.yml back and ignore the error you get locally....

` author:

chrisroederucdenver commented 4 months ago

Using quarto 1.4.549 on macos commandline, at the root of the project, with this change I get: `[ 1/16] index.qmd WARNING: One or more extensions have been built in to Quarto. Please use the following command to remove the unneeded extension: quarto remove extension quarto-ext/lightbox ERROR: Template partial /Users/roederc/work/git_n3c/guide-to-n3c-v1/title-block.html was not found. Please confirm that the path to the file is correct.

Stack trace: at file:///Applications/quarto/bin/quarto.js:41490:19 at Array.flatMap () at readPartials (file:///Applications/quarto/bin/quarto.js:41484:20) at runPandoc (file:///Applications/quarto/bin/quarto.js:68839:30) at eventLoopTick (ext:core/01_core.js:183:11) at async renderPandoc (file:///Applications/quarto/bin/quarto.js:70041:26) at async Object.onRender (file:///Applications/quarto/bin/quarto.js:91500:42) at async renderFileInternal (file:///Applications/quarto/bin/quarto.js:77238:17) at async renderFiles (file:///Applications/quarto/bin/quarto.js:77062:17) at async renderProject (file:///Applications/quarto/bin/quarto.js:77389:25) `