search

National-Clinical-Cohort-Collaborative / Data-Ingestion-and-Harmonization

Data Ingestion and Harmonization
41 stars 12 forks source link

ACT CDM : long-COVID clinic visit data in ACT CDM is submitted via the observation_fact table. Add logic to handle this specialty clinic visit data. #78

Closed stephanieshong closed 2 years ago

stephanieshong commented 2 years ago

Long-COVID clinic visit data in ACT CDM is submitted via the observation_fact table. Then concept_cd will contain data with the "N3C:long-covid clinic" prefix. This data should be added to the observation domain with the concept_id of 2004207791. 2004207791 is N3C observation concept id for long COVID clinic visit

stephanieshong commented 2 years ago

The logic has been added to the master branch in observation domain. Once the template upgrade is enabled for ACT CDM we will create a new template version with this logic and deploy to all ACT sites pipeline.

stephanieshong commented 2 years ago

Waiting to deploy the updated template version to all ACT sites. Currently the pipeline checks are being added. Once the task of adding the pipeline checks are complete we can upgrade and deploy the code to process the long covid clinic visit mapping feature enhancement to all ACT sites.

stephanieshong commented 2 years ago

Done. PR merged to ACT template source. Add N3C:long-covid clinic in the concept_cd are added to the Observation domain.

stephanieshong commented 2 years ago

Done. PR merged to TriNetX template source. Add is_long_covid flag row data in encounter to Observation domain.