NationalGenomicsInfrastructure / anglerfish

Anglerfish - Nanopore reads from Illumina libraries
MIT License
2 stars 4 forks source link

More opinionated checks and warnings pushed to the anglerfish report #79

Open remiolsen opened 6 months ago

remiolsen commented 6 months ago

Currently anglerfish is taking a "just the facts" approach to reporting the results. It does not have any opinion for instance if it thinks your pool is unbalanced. Some warnings are buried in the log output, however. Maybe it should report checks (like FastQC does), along with metrics and their thresholds for each check. For instance

Also the thresholds should be configurable.