add sample indexes to report

NationalGenomicsInfrastructure / anglerfish

Anglerfish - Nanopore reads from Illumina libraries

MIT License

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add sample indexes to report #89

Open FranBonath opened 3 weeks ago

FranBonath commented 3 weeks ago

The report currently only shows undetermined indexes. Would be nice to also see the (Illumina) indexes for each sample, because it makes troubleshooting easier.

remiolsen commented 3 weeks ago

I'm sorry, what do you mean? Do you want an Illumina samplesheet or read counts as input? Or maybe something like the anglerfish_dataframe.csv which is a current feature but might need some updating / streamlining. Take a look at an example one:

anglerfish_dataframe.csv

kedhammar commented 2 weeks ago

Yes @FranBonath I would say opening the .csv dataframe in a spreadsheet would be the best option for troubleshooting. If you like I can make sure the dataframe is dumped in LIMS.