Sarek wes defaults upps

NationalGenomicsInfrastructure / irma-provision

Ansible playbooks for provisioning NGI pipeline and related sw

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Sarek wes defaults upps #427

Closed monikaBrandt closed 2 years ago

monikaBrandt commented 2 years ago

In this PR the following changes are included:

When running Sarek the parameter --generate_gvcf will be added as default.
A new README.md for WES analysed with Sarek is now available.
A new TACA-config for staging of WES analysed with Sarek is now available.

monikaBrandt commented 2 years ago

Apparently I'm not allowed to set Reviewers on this PR. It would be great if someone from Uppsala and someone from Stockholm can have a look at it. Maybe @aanil and @b97pla can help me with code review? :)

monikaBrandt commented 2 years ago

Thank you @aanil and @b97pla for your valuable comments! There is a new commit available to this PR that hopefully will fix the small errors.