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NationalGenomicsInfrastructure
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irma-provision
Ansible playbooks for provisioning NGI pipeline and related sw
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Cherry-pick from bimonthly to solve arteria-delivery issue
#395
matrulda
closed
3 years ago
0
Update ngi_pipeline version to increase default qc walltime
#394
aanil
closed
3 years ago
0
Add nfcore/rnafusion v1.2.0
#393
aanil
closed
3 years ago
1
Update Readme
#392
aanil
closed
3 years ago
1
Bimonthly: fix arteria services
#391
matrulda
closed
3 years ago
0
Update nextflow release to get rnaseq to work
#390
aanil
closed
3 years ago
0
Add seq center to irma site config for sarek and atacseq
#389
aanil
closed
3 years ago
1
Update for py3
#388
aanil
closed
3 years ago
0
New Delivery Readmes for sthlm
#387
aanil
closed
3 years ago
0
Update to rnaseq3 with new temp role, bump nextflow to v20.10.0
#386
aanil
closed
3 years ago
1
Bump ngi_pipeline, taca-ngi-pipeline and ngi_reports
#385
aanil
closed
3 years ago
1
Make playbooks and roles compatible with Ansible 2.9
#384
slohse
closed
3 years ago
0
Monthly merge to master for v1.20
#383
aanil
closed
3 years ago
0
Bump taca-ngi-pipeline
#382
aanil
closed
3 years ago
0
Update code to add symlink in sync.py
#381
aanil
closed
3 years ago
1
Update sync to make dryrun optional and to specify a particular deployment directory
#380
aanil
closed
3 years ago
0
Update ngi-reports
#379
aanil
closed
3 years ago
0
Fix matplotlib version in multiqc and bump ngi_reports
#378
aanil
closed
3 years ago
0
Bump ngi_pipeline, taca, taca_ngi_pipeline amd multiqc_ngi
#377
aanil
closed
3 years ago
1
Update sync.py to only sync the most recent staging/production environment + containers
#376
matrulda
closed
3 years ago
1
Write site specific resources to separate folders
#375
matrulda
closed
3 years ago
1
Update ngi_reports to include updated run setup
#374
aanil
closed
3 years ago
0
Remove neutronstar and update directory permissions in nf-core
#373
aanil
closed
3 years ago
0
Remove unused stuff
#372
ssjunnebo
closed
3 years ago
1
Stage sarek results with taca
#371
matrulda
closed
3 years ago
1
Create a new containers dir and updates to TACA and ngi_reports
#370
aanil
closed
3 years ago
2
Upgrade conda
#369
ssjunnebo
opened
4 years ago
0
Update the Ansible version
#368
ssjunnebo
closed
3 years ago
1
Clean up old deployments
#367
ssjunnebo
opened
4 years ago
0
Split the deployment into smaller sections for a quicker deployment process
#366
ssjunnebo
opened
4 years ago
0
Set up a procedure for automated deployment tests
#365
ssjunnebo
opened
4 years ago
3
Figure out file ownership issues
#364
ssjunnebo
opened
4 years ago
0
Port ngi_pipeline to py3
#363
matrulda
closed
2 years ago
1
Define deployment schedule and document in README
#362
matrulda
opened
4 years ago
0
Update multiqc_ngi version
#361
aanil
closed
4 years ago
0
Update uppsala nextflow conf
#360
matrulda
closed
4 years ago
0
Update TACA: py3 compatibility and more
#359
aanil
closed
4 years ago
0
Bio 1876 ngi pipeline adaptation to sarek 2.6
#358
b97pla
closed
4 years ago
0
Update multiqc version
#357
aanil
closed
4 years ago
0
Make SILVA download conditional on ampliseq
#356
aanil
closed
4 years ago
0
Remove unnecessary task in ngi_reports role
#355
aanil
closed
4 years ago
0
Fix command to create conda env
#354
aanil
closed
4 years ago
0
Update role to reflect ngi_reports code refactor
#353
aanil
closed
4 years ago
0
Bump multiqc and add an env with python 3.8
#352
aanil
closed
4 years ago
0
Update sarek, ngi_report, taca, statusdb, flowcell_parser versions
#351
aanil
closed
4 years ago
0
Add nfcore/viralrecon
#350
aanil
closed
4 years ago
0
Add MegaQC details to upps multiqc config
#349
matrulda
closed
4 years ago
0
Remove pointless backslashes to split lines
#348
aanil
closed
4 years ago
0
Fix location for ampliseq classifier
#347
aanil
closed
4 years ago
0
Create temp directories explicitly
#346
aanil
closed
4 years ago
0
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