NationalGenomicsInfrastructure / ngi_pipeline

Code driving the production pipeline at SciLifeLab
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determine libprep based on sample number, project id, sample name and… #383

Closed b97pla closed 6 years ago

b97pla commented 6 years ago

… lane number

This PR introduces a modification so that the libprep id will be properly picked up from the samplesheet for SNP&SEQ. Currently, the libprep will not be properly recognized in case the same sample occurs multiple times (with different barcodes) in the same lane. This is now fixed so that the organise code will try to match the sample number in the fastq file to the entry in the sample sheet.