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NationalGenomicsInfrastructure / piper

A genomics pipeline build on top of the GATK Queue framework
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Add concordance check with snp-genotyping #27

Closed johandahlberg closed 9 years ago

johandahlberg commented 10 years ago

If there are snp-genotyping results for a project, if should be possible to add those into the analysis. However, these might not always be available, so this needs to be a optional step.

johandahlberg commented 10 years ago

This might be a interesting alternative to look up: http://genome.sph.umich.edu/wiki/VerifyBamID

mariogiov commented 9 years ago

@johandahlberg I believe when we spoke it sounded like this one was done?

johandahlberg commented 9 years ago

Yes - indeed it is. Thanks for reminding me. I'll close it.