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NationalGenomicsInfrastructure / piper

A genomics pipeline build on top of the GATK Queue framework
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Qualimap: add parameter for comparing GC content distribution with the reference #37

Closed ewels closed 9 years ago

ewels commented 9 years ago

Small thing that I just noticed in the Qualimap documentation - would it be possible to add this parameter for comparing GC content distribution with the reference?

Compare GC content distribution with This allows to compare the GC distribution of the sample with the selected pre-calculated genome GC distribution. Currently two genome distributions are available: human (hg19) and mouse (mm9). More species will be included in future releases.

As far as I can tell, all this does is provide a reference on this plot, which I think is quite nice:

gc_dist

johandahlberg commented 9 years ago

Good suggestion! Will do it.