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NationalGenomicsInfrastructure / piper

A genomics pipeline build on top of the GATK Queue framework
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Problem with java module (maybe nestor problem?) #4

Closed vezzi closed 10 years ago

vezzi commented 10 years ago

While trying to replicate the problem with sthlm2UUSNP I got a java error. The main difference between te afternoon run and the morning run is that I restarted the session on Nestor thus loosing all the loaded modules:

I loaded module load java/sun_jdk1.7.0_25

and then sthlm2UUSNP worked. I think this is the same problem I had this yesterday when installing piper

johandahlberg commented 10 years ago

Since Java is a requirement you always have to have java loaded. I load module load java/sun_jdk1.7.0_25 in my .bashrc. So I'd recommend you do the same.